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Copy Data from S3 to Public Storage

Here is a quick tutorial on how to copy Data from S3 to a public storage. In this tutorial, we will scrape all the links from a public AWS S3 buckets and then copy the data to IPFS using Bacalhau.

Prerequisite​

To get started, you need to install the Bacalhau client, see more information here

Running a Bacalhau Job​

%%bash --out job_id
bacalhau docker run \
-i "s3://noaa-goes16/ABI-L1b-RadC/2000/001/12/OR_ABI-L1b-RadC-M3C01*:/inputs,opt=region=us-east-1" \
--id-only \
--wait \
alpine \
-- sh -c "cp -r /inputs/* /outputs/"

Structure of the Command​

Let's look closely at the command above:

  • bacalhau docker run: call to bacalhau

  • -i "s3://noaa-goes16/ABI-L1b-RadC/2000/001/12/OR_ABI-L1b-RadC-M3C01*:/inputs,opt=region=us-east-1: defines S3 objects as inputs to the job. In this case, it will download all objects that match the prefix ABI-L1b-RadC/2000/001/12/OR_ABI-L1b-RadC-M3C01 from the bucket noaa-goes16 in us-east-1 region, and mount the objects under /inputs path inside the docker job.

  • -- sh -c "cp -r /inputs/* /outputs/": copies all files under /inputs to /outputs, which is by default the result output directory which all of its content will be published to the specified destination, which is IPFS by default

When a job is submitted, Bacalhau prints out the related job_id. We store that in an environment variable so that we can reuse it later on.

tip

This only works with datasets that are publicly accessible and don't require an AWS account or pay to use buckets.

Checking the State of your Jobs​

  • Job status: You can check the status of the job using bacalhau list. 
%%bash
bacalhau list --id-filter ${JOB_ID} --wide

When it says Published or Completed, that means the job is done, and we can get the results.

  • Job information: You can find out more information about your job by using bacalhau describe.
%%bash
bacalhau describe ${JOB_ID}
  • Job download: You can download your job results directly by using bacalhau get. Alternatively, you can choose to create a directory to store your results. In the command below, we created a directory and downloaded our job output to be stored in that directory.
%%bash
rm -rf results && mkdir -p results # Temporary directory to store the results
bacalhau get $JOB_ID --output-dir results # Download the results

After the download has finished you should see the following contents in results directory.

Viewing your Job Output​

To view your file, run the following command:

%%bash
ls -1 results/outputs
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170671748180.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170691603180.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170751219598.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170752149454.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170752204183.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170752234173.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170901216521.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20170951807462.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171000619157.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171061215161.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171071918365.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171091517487.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171152112459.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171221432456.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171232313205.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171301618116.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171572234151.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171592127442.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171801512461.nc
OR_ABI-L1b-RadC-M3C01_G16_s20000011200000_e20000011200000_c20171941452463.nc

Extract Result CID​

Installing jq to extract CID from the result description

%%bash
sudo apt update
sudo apt install jq
Extracting the CIDs from output json
%%bash
bacalhau describe ${JOB_ID} --json \
| jq -r '.State.Executions[].PublishedResults.CID | select (. != null)'
QmYFhG668yJZmtk84SMMdbrz5Uvuh78Q8nLxTgLDWShkhR

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